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Season One
- "The Sidekick"
- "Can An Evil Genius Crash on Your Couch for a Few Days?"
- "Translate This"
- "Buster"
- "My Fair Sticksy"
- "Fortress of Squalitude"
- "Double Doomsday"
- "Eggheads"
- "Guilt Tripping"
- "Dude, Where's My Eggman?"
- "Cowbot"
- "Circus of Plunders"
- "Unlucky Knuckles"
- "The Meteor"
- "Aim Low"
- "How to Succeed in Evil Without Really Trying"
- "Don't Judge Me"
- "Dr. Eggman's Tomato Sauce"
- "Sole Power"
- "Hedgehog Day"
- "Sleeping Giant"
- "The Curse Of Buddy Buddy Temple"
- "Let's Play Musical Friends"
- "Late Fees"
- "Into The Wilderness"
- "Eggman Unplugged"
- "Chez Amy"
- "Blue With Envy"
- "Curse of The Cross-Eyed Moose"
- "Chili Dog Day Afternoon"
- "Closed Door Policy"
- "Mayor Knuckles"
- "Eggman the Auteur"
- "Just a Guy"
- "Two Good to Be True"
- "Beyond the Valley of the Cubots"
- "Next Top Villain"
- "New Year's Retribution"
- "Battle of the Boy Bands"
- "Tails' Crush"
- "Bro-Down Showdown"
- "Late Night Wars"
- "Fire in a Crowded Workshop"
- "It Wasn't Me, It Was The One-Armed Hedgehog"
- "Robot Battle Royale"
- "No Robots Allowed"
- "Fuzzy Puppy Buddies"
- "Designated Heroes"
- "Role Models"
- "Cabin Fever"
- "Counter Productive"
- "It Takes a Village to Defeat a Hedgehog"
Season Two
- "Tommy Thunder: Method Actor"
- "Spacemageddonocalypse"
- "Nutwork"
- "Alone Again, Unnaturally"
- "The Biggest Fan"
- "Anything You Can Do, I Can Do Worse-er"
- "I Can Sea Sonic's Fear From Here"
- "In the Midnight Hour"
- "Multi-Tails"
- "Strike!"
- "The Evil Dr. Orbot"
- "Knuck Knuck! Who's Here?"
- "Mech Suits Me"
- "FiendBot"
- "Og Man Out"
- "Knine-to-Five Knuckles"
- "Blackout"
- "Unnamed Episode"
- "Robot Employees"
- "Give Bees a Chance"
- "Mombot"
- "Muckfoot"
- "Nominatus Rising"
- "Eggman's Brother"
- "Do Not Disturb"
- "Robots from the Sky Part One"
- "Robots from the Sky Part Two"
- "Robots from the Sky Part Three"
- "Robots from the Sky Part Four"
- "Flea-ing From Trouble"
- "Lightning Bowler Society"
- "Planes, Trains, and Dude-Mobiles"
- "Sticks and Amy's Excellent Staycation"
- "Inn Sanity"
- "Mister Eggman"
- "The Haunted Lair"
- "Return of the Buddy Buddy Temple of Doom"
- "Eggman's Anti-Gravity Ray"
- "Victory"
- "Three Men and My Baby!"
- "Where Have All the Sonics Gone?"
- "If You Build It They Will Race"
- "Chain Letter"
- "Vector Detector"
- "Three Minutes or Less"
- "Lair on Lockdown"
- "You and I Bee-come One"
- "Don't Make Me Angry"
- "Eggman Family Vacation"
- "Return to Beyond the Valley of the Cubots"
- "Eggman: The Video Game Part 1"
- "Eggman: The Video Game Part 2: The End of the World"